Bioinformatics- Species Specific Databases Human |
Human mutation resources/databases |
Vertebrates |
Inveretbrates |
Insects Plants |
Fungi |
Bacteria |
Viruses & Phages |
Archaea |
Mitochondrian & Chloroplast Human Chromosomes [
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Human mutation resources/databases [
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Vertebrates Inveretbrates [
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Insects Plants - NAL - AGIS - Access to many plant genome databases at the National Agricultural Library
- Mendel - Plant gene nomenclature database from CPGN
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ARS Genome Database Resource (Cornell) ARS Genome Database Resource is primarily a site for communication of Plant Genome data among scientists worldwide. The medium is a set of genome databases, similar to the ones for Human genome mapping and sequencing. They include data about plant genes, chromosome maps, DNA fingerprints, beneficial traits, and crop varieties that possess those traits.
- Arabidopsis Swiss-Prot list - Links to A.thaliana WWW sites and to Swiss-Prot entries
- TAIR - The Arabidopsis Information Resource
- MATDB - MIPS Arabidopsis thaliana db
- TIGR At - TIGR Arabidopsis thaliana db
- Arabidopsis ABC transporters
- AMPL - Arabidopsis Membrane Protein Library
- Arabidopsis at PlaCe - Site with info on P450, glucosyltransferases, etc.
- Gramene - A comparative mapping resource for grains
- KOMUGI (Japan)
GrainGenes , a genome database for Triticeae and related species. RiceGenes a genome database for rice. - RGP - Rice Genome Research Program
- Oryzabase - Japanese rice genome db
- RiceGAAS: Rice Genome Annotation Database
A rice genome automated annotation system; integrates programs for prediction and analysis of protein-coding gene structure. - Rice genome project at Wisconsin
- Rice-research.org - Monsanto rice genome site
- TIGR OsGI - TIGR Rice Genome project
- BeanGenes - Beans genome db
- BeanRef-Links and references from literature to different aspects of research on beans (Phaseolus and Vigna) - Beans genome db and other resources
- Chlamydomonas resource center
- ChlamyDB - Chlamydomonas reinhardtii genome db
- CottonDB - Cotton genome db
- MaizeDb - Maize genome db
- Mendel Bioinformatics Group , UK
Mendel-ESTS , contains all of the plant EST and STS sequences currently in dbEST and dbSTS (>94,000) related to the sequences, grouped by gene family, in the Gene Family Database .
Mendel-GFDb Database of Genes Organized by Families. Now with Pfam, Prosite & TRANSFAC domain information - Mendel-CPGN : developinging a common nomenclature for sequenced plant genes
- INRA Maize - INRA Maize genome db
- Plant Chromatin Database
Database for chromatin proteins in plants, including functions and molecular phylogenetic relationships, with initial emphasis on Arabidopsis and maize - Pisum sativum (pea) web site
- TIGR Potato - TIGR Potato Functional Genomics project
- TIGR GmGI - TIGR Soybean Gene Index
- Snapdragon (A.majus) web site
- SolGenes -- Genome Database for the Solanaceae
A U.S.D.A.-funded Genome Database for the Solanaceae, containing information about potatoes, tomatoes, peppers, and related species. - SorghumDB - Sorghum genome db
- SIU-C Soy Phytoestrogen Gene Mapping
- SoyBase - Soybean genome db
- SoyBase metabolic db - Metabolic subset of the soybean genome db
- TIGR LeGI - TIGR Tomato Gene Index
- Dendrome - Forest trees genome db
- ZmDB Maize Genome Database
Goals include discovering maize genes using EST sequencing and engineered Mu (RescueMu) tagging, and developing new tools to facilitate gene mapping and phenotypic analysis.
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Fungi Bacteria [
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Viruses & Phages [
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Archaea Mitochondrian & Chloroplast - GOBASE - Organelle Genome Database
- MitoDat - Mendelian Inheritance and the Mitochondrion db (mitochondrial nuclear genes)
- MITOMAP - Human mitochondrial genome db
- MmtDB - Metazoa mitochondrial DNA variants db
- MitBASE - Integrated mitochondrial DNA db
- MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis
- HvrBase - Primates mtDNA control region sequences compilation
- MOUSE - Mitochondrial and Other Useful SEquences (human and apes mit. DNA db)
- C.caldarium - Cyanidium caldarium strain RK1 chloroplast genome
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